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Hi Argiro,
It will be hard to introduce total energy savings into a bottom-up model. This is because you must enter energy consumption (or savings) at the fuel level in the tree. That means that to include high-level energy savings in a bottom-up model you would have to make assumptions about how each end use would make up the total energy savings.
A decoupled approach is another option for setting up your model. This would allow you to create a folder specific to scenarios to subtract energy savings from the baseline for different mitigation measures.
For more information on this structure see below:
http://www.energycommunity.org/uploads/Demand_Structure_Methodologies.pdf
Tory