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Hi Sarada,
1) For coal mining, exogenous capacity can be defined either as the maximum production of coal or feedstock of coal that can be mined in a given year. What you actually produce in a given year may be less than the capacity due to the availability of the process.
The process efficiency is technically defined as the energy content of the output fuels divided by the energy content of the feedstock fuels. This efficiency should take into account any conversion losses from the mining and washing processes. I suggest talking with a specific mining operation to get quality assumptions for this.
2) LEAP currently only tracks energy usage, so any coal or water waste from the process will not be included in a LEAP analysis.
3) Remember that there are 2 modes of calculation for any capacity-based transformation module: historical and simulation, and the mode is chosen by specifying a "First Simulation Year" in current accounts.
Historical: In all years before the first simulation year, LEAP simply uses the generation from the "Historical Production" variable. In this case, you should enter the net generation (after conversion losses and auxiliary consumption) output of the power plant. Do not include T&D losses because you should have a separate module fot those losses.
Simulation: In the first simulation year and afterwards, the historical generation variable is no longer used. Instead, you must use the Capacity, Capacity Credit, Availability, and Efficiency variables to define output in any given year. In your example, the conversion loss and auxiliary consumption should be factored into your overall thermal efficiency. Just as with the historical mode, T&D loses should be included in a separate module.
Best,
Tory