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Hi Aditya,
1. I understand your question to be that you want to know how to choose the number of vintage years for your transport stock - is that correct? The number of vintage years for your stock, which you set in Basic Params: Stock, is not related to number of years which your scenario spans. It is simply the number of different vintages (different manufacturing years) that you allow your stock to be distributed over at any time. For example, if your number of vintage years is equal to 10, then the stock in the year 2010 may be composed of vehicles of different ages back to the 2000 manufacturing year. In the year 2011, you will not find any stock manufactured prior to the year 2001, and so on.
The choice of the number of years to include is up to you, and depends on the age of the stock. For example, you could try to set this number so that no more than 5% of your existing stock is older than your maximum number of vintage years.
2. Without sufficient sales to replace retired vehicles, your stock will continue to decline. So if your sales are less than 1% of the stock in each year, but more than 1% are retired (to check this, you will need to look at the Survival Profile which you have assigned to buses), you will observe declining stocks.
Have a look at the following help page, which might help to answer some of your questions:
http://www.energycommunity.org/WebHelpPro/Demand/Vintaging_Calculations.htm
3. Unfortunately, I can't provide an answer without more information about the Environmental Loadings which you have assigned to your vehicles in each scenario. Remember, LEAP only counts up the environmental effects which you enter under each fuel, so be sure that you have entered these correctly.
Hope this helps!
Taylor