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Hi Umar,
The choice to add another transformation module below electricity generation depends on the resource requirement accounting you want to do. Without an additional module, the black liquor requirements from your cogeneration plant will be passed onto the Resource branches of your tree where they will be met with imports or domestic production. To model domestic production in the Resources branches, you might connect the "Yield" variable for your Black Liquor fuel to the pulp mill's demand using an expression with branch references. Have a look here for some advice about building expressions:
http://www.energycommunity.org/WebHelpPro/Concepts/Expressions.htm
However if you choose to include a module converting wood to black liquor, then you will instead see an additional resource requirement for wood.
Note that the black liquor cogeneration process under your Transformation branches will be used to meet the electricity and heat requirements of your whole area - not just your pulp mill. A simple way around this may be to instead model the mill's cogeneration plant as a reduction in electricity and heat demand, instead of on the supply side of your model.
Just a few thoughts - hope this helps!
Taylor