Hi Matt,
I can confirm this on my computer - thanks for pointing this out so clearly.
We'll look more carefully into the problem and hope to fix it in an upcoming version of LEAP. In the meantime, all that I can suggest is that you include a multiplicative factor for all Transformation Capital Costs (perhaps use a Key Assumption for this) which is set equal to 0.5. Once the problem is resolved, you will be able to set its value to 1.0 (or remove it altogether).
Sorry for the trouble,
Taylor